@book{ross-thermodynamics,
     author="John Ross",
     title="Thermodynamics and Fluctuations far from Equilibrium",
		 institution="Stanford University",
		 publisher="Springer-Verlag, Berlin, Heidelberg",
		 year="2008"}

@book{bop-systems-bio,
	author="Bernhard Palsson",
	title="Systems Biology: Properties of Reconstructed Networks",
	publisher="Cambridge University Press",
	institution="University of California San Diego",
	year="2006"}

@article{bop-fba,
	author="Jeffrey Orth and Ines Thiele and Bernard Palsson",
	title="What is flux balance analysis?",
	journal="Nature Biotechnology",
	year="2010",
	volume="28",
	number="3",
	pages="245-248"}

@article{fleming-opt,
	author="R. M. T. Fleming and C. M. Maes and M. A. Saunders and Y. Ye and B. {\O}. Palsson",
	title="A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks",
	journal={(submitted)},
	year="2011"}

@article{Deng,
	author="Jian Deng and Martin Feinberg and Chris Jones and Adrian Nachman",
	title="On the Steady States of Weakly Reversible Chemical Reaction Networks",
	journal={(submitted)},
	year="2008"}

@unpublished{Anderson-GAC,
	author="David F. Anderson",
	title="A proof of the Global Attractor Conjecture in the single linkage class case",
	year="2011",
	note="arXiv:1101.0761v3"}

@book{gunawardena,
  	author="Jeremy Gunawardena",
	title="Chemical Reaction Network Theory for In-silico Biologists",
	publisher="Bauer Center For Genomics Research, Harvard University, Cambridge, MA",
	year ="2003"}

@article{GMAK,
	author="Fritz Horn and Roy Jackson",
	title="General Mass Action Kinetics",
	journal="Archives of Rational Mech. Anal.",
	year="1972",
	volume="47",
	pages="81-116"}

@article{uniqueEPandLyapunov,
	author="Fritz Horn and Martin Feinberg",
	title="Dynamics of open chemical systems and the algebraic structure of the underlying reaction network",
	journal="Chem. Eng. Sci.",
	year="1974",
	volume="29",
	pages="775-787"}

@article{necc-suff-CB,
	author="Fritz Horn",
	title="Necessary and Sufficient Conditions for Complex Balancing in Chemical Kinetics",
	journal="Arch. Rational Mech. Anal.",
	year="1972",
	volume="49",
	pages="172-186"}
	
@article{deficiency0,
	author="Martin Feinberg",
	title="Chemical reaction network structure and the stability of complex isothermal reactors {I. The} deficiency zero and deficiency one theorems",
	journal="Chem. Eng. Sci.",
	year="1987",
	volume="42",
	number="10",
	pages="2229-68"}
	
@article{deficiency1,
	author="Martin Feinberg",
	title="Chemical reaction network structure and the stability of complex isothermal reactors {II. Multiple} steady states for networks of deficiency one",
	journal="Chem. Eng. Sci.",
	year="1988",
	volume="43",
	number="1",
	pages="1-25"}

@misc{pdco,
  author="Michael Saunders",
  title="Primal-Dual interior method for Convex Objectives",
  note="http://www.stanford.edu/group/SOL/software/pdco.html"
}
